API Documentation

• metabograph package
  • Subpackages
    • metabograph.biopax package
      • Submodules
      • metabograph.biopax.graph_generator module
      • metabograph.biopax.protein module
      • metabograph.biopax.query_manager module
      • Module contents
    • metabograph.uniprot package
      • Submodules
      • metabograph.uniprot.id_mapping module
      • Module contents
  • Submodules
  • metabograph.cache module
    • CacheManager
      • CacheManager.__init__()
      • CacheManager.cache_dir
      • CacheManager.clear()
      • CacheManager.get_path()
  • metabograph.common module
    • download()
  • metabograph.config module
    • BiopaxData
      • BiopaxData.__init__()
      • BiopaxData.custom_owl_files
      • BiopaxData.endpoint
      • BiopaxData.include_complexes
      • BiopaxData.include_default_owl_files
      • BiopaxData.include_member_entities
      • BiopaxData.keep_unknown
      • BiopaxData.locations
      • BiopaxData.pathways
      • BiopaxData.species
    • CacheData
      • CacheData.__init__()
      • CacheData.path
      • CacheData.timeout
    • Config
      • Config.__init__()
      • Config.asdict()
      • Config.get_documented_yaml()
      • Config.load()
      • Config.resolve_path()
    • ConfigData
      • ConfigData.__init__()
      • ConfigData.biopax
      • ConfigData.cache
  • metabograph.exception module
    • MetabographConfigError
    • MetabographException
    • MetabographIOError
    • MetabographRuntimeError
  • metabograph.fuseki module
    • main()
    • run_fuseki_server()
    • run_main()
  • metabograph.logging module
    • configure_logging()
  • metabograph.main module
    • main()
    • run_main()
  • metabograph.owl module
    • OwlLoader
      • OwlLoader.__init__()
      • OwlLoader.load()
      • OwlLoader.owlready2_world
      • OwlLoader.query()
      • OwlLoader.rdflib_graph
  • metabograph.sparql module
    • canonicalize()
    • hash_query()
  • metabograph.utils module
    • dict_from_dataframe_columns()
    • get_common_prefix()
    • hash_data()
    • hash_file()
    • is_older_or_missing()
  • Module contents